2023-07-04 12:58:57 [time] __start__
2023-07-04 18:58:57 [cr_ana::stages::graph_clustering] computing k-nearest neighbors with k = 215
2023-07-04 18:58:57 [scan_rs::nn] constructing ball tree of 5118 points
2023-07-04 18:58:57 [scan_rs::nn] querying points for 215 neighbors
2023-07-04 18:58:57 [cr_ana::stages::graph_clustering] running louvain
2023-07-04 18:58:57 [cr_ana::louvain] building network for neighbor matrix of shape: (5118,215)
2023-07-04 18:58:57 [cr_ana::louvain] louvain starting cpm score: -0.000206
2023-07-04 18:58:58 [cr_ana::louvain] louvain optimized in 31 iterations
2023-07-04 18:58:58 [cr_ana::louvain] louvain final cpm score: 0.609206
2023-07-04 18:58:58 [cr_ana::stages::graph_clustering] merging clusters
2023-07-04 18:58:58 [scan_rs::merge_clusters] computing DE params on 41970 x 1445 matrix
2023-07-04 18:58:58 [scan_rs::merge_clusters] computing DE on 747 vs 698 cells
2023-07-04 18:58:58 [scan_rs::merge_clusters] computing DE params on 41970 x 1086 matrix
2023-07-04 18:58:58 [scan_rs::merge_clusters] computing DE on 725 vs 361 cells
2023-07-04 18:58:59 [scan_rs::merge_clusters] computing DE params on 41970 x 684 matrix
2023-07-04 18:58:59 [scan_rs::merge_clusters] computing DE on 463 vs 221 cells
2023-07-04 18:58:59 [scan_rs::merge_clusters] computing DE params on 41970 x 404 matrix
2023-07-04 18:58:59 [scan_rs::merge_clusters] computing DE on 259 vs 145 cells
2023-07-04 18:58:59 [scan_rs::merge_clusters] computing DE params on 41970 x 775 matrix
2023-07-04 18:59:00 [scan_rs::merge_clusters] computing DE on 529 vs 246 cells
2023-07-04 12:59:00 [time] __end__
