2023-07-04 13:00:29 [time] __start__
2023-07-04 13:00:29 [info] Running crconverter: crconverter Nodule_1gex_only SC_RNA_COUNTER_CS --matrix /data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9474a46b55/files/filtered_matrices_h5.h5 --analysis /data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u9474a46c01/files/analysis/analysis.h5 --output /data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-u9474a46c4d/files/output_for_cloupe.cloupe --description  --metrics /data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-u9474a46c48/files/metrics_summary_json.json --gemgroups /data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-u9474a46c4d/files/gem_group_index_json.json
2023-07-04 13:00:41 [info] crconverter output: b'inputs: {name:Nodule_1gex_only description: pipestanceType:1 outputPath:/data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-u9474a46c4d/files/output_for_cloupe.cloupe matrixPath:/data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9474a46b55/files/filtered_matrices_h5.h5 analysisPath:/data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u9474a46c01/files/analysis/analysis.h5 metricsPath:/data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-u9474a46c48/files/metrics_summary_json.json aggregationPath: gemGroupsPath:/data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-u9474a46c4d/files/gem_group_index_json.json contigInfoPath: peakLocationsPath: fragmentsIndexPath: geneAnnotationsPath: geneAnnotationTypes:[] spatialImagePath: spatialFiducialsPath: spatialTissuePath: spatialDZIPath: spatialTilesPaths:[] spatialScaleFactorsPath: spatialAggregationPath: spatialImageType: spatialEnrichment: spatialImagePageNames:[] analysisTitle:Default Pipeline Analysis cellsPerSample: cellsPerTag: cellsPerProtospacer:}\nConverting matrix:  /data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9474a46b55/files/filtered_matrices_h5.h5\nConverting analysis.h5:  /data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u9474a46c01/files/analysis/analysis.h5\nConverting RunInfo\nWrote .cloupe file to /data/adf/meeting_prep/glyma.nodule_multiome/Nodule_1gex_only/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-u9474a46c4d/files/output_for_cloupe.cloupe\n'
2023-07-04 13:00:41 [time] __end__
