[stdout]
2023-07-04 19:38:13 [cr_ana::stages::graph_clustering] computing k-nearest neighbors with k = 252
2023-07-04 19:38:13 [scan_rs::nn] constructing ball tree of 10374 points
2023-07-04 19:38:13 [scan_rs::nn] querying points for 252 neighbors
2023-07-04 19:38:14 [cr_ana::stages::graph_clustering] running louvain
2023-07-04 19:38:14 [cr_ana::louvain] building network for neighbor matrix of shape: (10374,252)
2023-07-04 19:38:14 [cr_ana::louvain] louvain starting cpm score: -0.000102
2023-07-04 19:38:15 [cr_ana::louvain] louvain optimized in 24 iterations
2023-07-04 19:38:15 [cr_ana::louvain] louvain final cpm score: 0.651566
2023-07-04 19:38:15 [cr_ana::stages::graph_clustering] merging clusters
2023-07-04 19:38:15 [scan_rs::merge_clusters] computing DE params on 44958 x 3101 matrix
2023-07-04 19:38:15 [scan_rs::merge_clusters] computing DE on 1583 vs 1518 cells
2023-07-04 19:38:16 [scan_rs::merge_clusters] computing DE params on 44958 x 906 matrix
2023-07-04 19:38:16 [scan_rs::merge_clusters] computing DE on 682 vs 224 cells
2023-07-04 19:38:17 [scan_rs::merge_clusters] computing DE params on 44958 x 1155 matrix
2023-07-04 19:38:17 [scan_rs::merge_clusters] computing DE on 810 vs 345 cells
2023-07-04 19:38:18 [scan_rs::merge_clusters] computing DE params on 44958 x 675 matrix
2023-07-04 19:38:18 [scan_rs::merge_clusters] computing DE on 345 vs 330 cells
2023-07-04 19:38:19 [scan_rs::merge_clusters] computing DE params on 44958 x 1373 matrix
2023-07-04 19:38:19 [scan_rs::merge_clusters] computing DE on 1130 vs 243 cells
