[stdout]
2023-07-04 03:34:02 [cr_ana::stages::graph_clustering] computing k-nearest neighbors with k = 177
2023-07-04 03:34:02 [scan_rs::nn] constructing ball tree of 2479 points
2023-07-04 03:34:02 [scan_rs::nn] querying points for 177 neighbors
2023-07-04 03:34:02 [cr_ana::stages::graph_clustering] running louvain
2023-07-04 03:34:02 [cr_ana::louvain] building network for neighbor matrix of shape: (2479,177)
2023-07-04 03:34:02 [cr_ana::louvain] louvain starting cpm score: -0.000418
2023-07-04 03:34:02 [cr_ana::louvain] louvain optimized in 9 iterations
2023-07-04 03:34:02 [cr_ana::louvain] louvain final cpm score: 0.688353
2023-07-04 03:34:02 [cr_ana::stages::graph_clustering] merging clusters
2023-07-04 03:34:02 [scan_rs::merge_clusters] computing DE params on 43470 x 608 matrix
2023-07-04 03:34:03 [scan_rs::merge_clusters] computing DE on 344 vs 264 cells
2023-07-04 03:34:03 [scan_rs::merge_clusters] computing DE params on 43470 x 809 matrix
2023-07-04 03:34:04 [scan_rs::merge_clusters] computing DE on 432 vs 377 cells
